No reason that a properly designed electrical system mod, carefully made with the correct materials, should be a cobbed-together POS.
All my electrical mods are made with crimped & soldered terminations, MIL-spec or Deutsch connectors, teflon (rodent resistant) insulated aircraft wire, heat-shrink tubing, and are double-insulated with fire proof silicone-over-fiberglass sleeving. With a little time spent shopping on-line and minimal skills, just about anyone can do the same.
Granted, over the years I have seen many crude, totally POS electrical system mods, with lumpy twisted-together splices, big wads of electrical tape, primitive attempts at soldering using acid-core flux, wiring pulled tight against sharp sheet-metal edges or draped near exhaust manifolds, etc.
Probably not a bad idea to keep some mini-fuses in the glove box just as a backup in case your diode/fuse or diode/PTC thermistor module should fail when you're far off-road, at least you can bring your alternator back in service.
Realistically, the only risk I can see to either the OEM fuse or the diode modules is a short circuit caused by rodent-chewed wiring, and it would have to be the alternator's voltage-sensing wire that got the insulation damaged AND then shorted to ground.